resampling() to sample without replacementgetLinearRegressions() to correct result dimensions and metric orderdata.table in the background for major speed
and memory usage improvements. Resampling the whole BioTIME database used to
take > 1 hour and now takes < 1 minute.data.frame,
data.table and tibble objects with dedicated functions.In the resampling function:
new argument summarise, TRUE by default keeps previous behaviour.
If TRUE, the abundance and/or biomass is summed per rarefyID while if FALSE the abundance and/or biomass will be summed per rarefyID/SAMPLE_DESC and gives more columns.
In the getAlphaMetrics and getBetaMetrics functions:
data.frames containing several resamplings are accepted
If the provided data contain several resamplings, metrics will be computed per resampling, per assemblageID, per year.
In the getLinearRegressions function:
removed the divType argument.
The function now reads the class of the objects produced by getAlphaMetrics
and getBetaMetrics and computes the expected metrics.
In the themeBioTIME function:
lp is soft deprecated in favour of legend.positionfontSize is soft deprecated in favour of font.sizecolx is soft deprecated in favour of axis.colourcoly is soft deprecated in favour of strip.background