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  "Package": "BioTIMEr",
  "Type": "Package",
  "Title": "Tools to Use and Explore the 'BioTIME' Database",
  "Version": "0.3.2",
  "Authors@R": "c(\nperson(\"Alban\", \"Sagouis\", role = c(\"aut\",\"cre\"),\nemail = \"alban.sagouis@idiv.de\",\ncomment = c(ORCID = \"0000-0002-3827-1063\")),\nperson(\"Faye\", \"Moyes\", role = \"aut\",\ncomment = c(ORCID = \"0000-0001-9687-0593\")),\nperson(\"Inês S.\", \"Martins\", role = c(\"aut\",\"rev\"),\ncomment = c(ORCID = \"0000-0003-4328-7286\")),\nperson(\"Shane A.\", \"Blowes\", role = \"ctb\",\ncomment = c(ORCID = \"0000-0001-6310-3670\")),\nperson(\"Viviana\", \"Brambilla\", role = \"ctb\",\ncomment = c(ORCID = \"0000-0002-0560-4693\")),\nperson(\"Cher F. Y.\", \"Chow\", role = \"ctb\",\ncomment = c(ORCID = \"0000-0002-1020-8409\")),\nperson(\"Ada\", \"Fontrodona-Eslava\", role = \"ctb\",\ncomment = c(ORCID = \"0000-0001-7275-7174\")),\nperson(\"Laura\",\"Antão\", role = c(\"ctb\",\"rev\"),\ncomment = c(ORCID = \"0000-0001-6612-9366\")),\nperson(\"Jonathan M.\", \"Chase\", role = \"fnd\",\ncomment = c(ORCID = \"0000-0001-5580-4303\")),\nperson(\"Maria\", \"Dornelas\", role = c(\"fnd\", \"cph\"),\ncomment = c(ORCID = \"0000-0003-2077-7055\")),\nperson(\"Anne E.\", \"Magurran\", role = \"fnd\",\ncomment = c(ORCID = \"0000-0002-0036-2795\")),\nperson(\"European Research Council grant AdG BioTIME 250189\",\nrole = \"fnd\"),\nperson(\"European Research Council grant PoC BioCHANGE 727440\",\nrole = \"fnd\"),\nperson(\"European Research Council grant AdG MetaCHANGE 101098020\",\nrole = \"fnd\"),\nperson(\"The Leverhulme Centre for Anthropocene Biodiversity grant RC-2018-021\",\nrole = \"fnd\"),\nperson(\"German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig\",\nrole = \"fnd\", comment = c(ROR = \"01jty7g66\")),\nperson(\"Martin Luther University Halle-Wittenberg\",\nrole = \"fnd\", comment = c(ROR = \"05gqaka33\")),\nperson(\"University of St Andrews\", role = \"fnd\",\ncomment = c(ROR = \"02wn5qz54\"))\n)",
  "Maintainer": "Alban Sagouis <alban.sagouis@idiv.de>",
  "License": "MIT + file LICENSE",
  "URL": "https://biotimehub.github.io/BioTIMEr/",
  "BugReports": "https://github.com/bioTIMEHub/BioTIMEr/issues",
  "Description": "The 'BioTIME' database was first published in 2018 and\ninspired ideas, questions, project and research article. To\nmake it even more accessible, an R package was created. The\n'BioTIMEr' package provides tools designed to interact with the\n'BioTIME' database. The functions provided include the\n'BioTIME' recommended methods for preparing (gridding and\nrarefaction) time series data, a selection of standard\nbiodiversity metrics (including species richness, numerical\nabundance and exponential Shannon) alongside examples on how to\ndisplay change over time. It also includes a sample subset of\nboth the query and meta data, the full versions of which are\nfreely available on the 'BioTIME' website\n<https://biotime.st-andrews.ac.uk/home.php>.",
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  "Language": "en-GB",
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  "Repository": "https://biotimehub.r-universe.dev",
  "Date/Publication": "2026-03-04 12:33:47 UTC",
  "RemoteUrl": "https://github.com/biotimehub/biotimer",
  "RemoteRef": "HEAD",
  "RemoteSha": "7c33f32f0235d2bb396ea8b71f7f39a91f0253f9",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-06-02 09:18:55 UTC",
    "User": "root"
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  "Author": "Alban Sagouis [aut, cre] (ORCID:\n<https://orcid.org/0000-0002-3827-1063>),\nFaye Moyes [aut] (ORCID: <https://orcid.org/0000-0001-9687-0593>),\nInês S. Martins [aut, rev] (ORCID:\n<https://orcid.org/0000-0003-4328-7286>),\nShane A. Blowes [ctb] (ORCID: <https://orcid.org/0000-0001-6310-3670>),\nViviana Brambilla [ctb] (ORCID:\n<https://orcid.org/0000-0002-0560-4693>),\nCher F. Y. Chow [ctb] (ORCID: <https://orcid.org/0000-0002-1020-8409>),\nAda Fontrodona-Eslava [ctb] (ORCID:\n<https://orcid.org/0000-0001-7275-7174>),\nLaura Antão [ctb, rev] (ORCID: <https://orcid.org/0000-0001-6612-9366>),\nJonathan M. Chase [fnd] (ORCID:\n<https://orcid.org/0000-0001-5580-4303>),\nMaria Dornelas [fnd, cph] (ORCID:\n<https://orcid.org/0000-0003-2077-7055>),\nAnne E. Magurran [fnd] (ORCID: <https://orcid.org/0000-0002-0036-2795>),\nEuropean Research Council grant AdG BioTIME 250189 [fnd],\nEuropean Research Council grant PoC BioCHANGE 727440 [fnd],\nEuropean Research Council grant AdG MetaCHANGE 101098020 [fnd],\nThe Leverhulme Centre for Anthropocene Biodiversity grant RC-2018-021\n[fnd],\nGerman Centre for Integrative Biodiversity Research (iDiv)\nHalle-Jena-Leipzig [fnd] (ROR: <https://ror.org/01jty7g66>),\nMartin Luther University Halle-Wittenberg [fnd] (ROR:\n<https://ror.org/05gqaka33>),\nUniversity of St Andrews [fnd] (ROR: <https://ror.org/02wn5qz54>)",
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    "gridding",
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    "scale_color_biotime",
    "scale_colour_biotime",
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      "title": "BioTIME subset",
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        "ABUNDANCE",
        "BIOMASS",
        "ID_SPECIES",
        "SAMPLE_DESC",
        "LATITUDE",
        "LONGITUDE",
        "DEPTH",
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        "REALM",
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        "HABITAT",
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        "BIOME_MAP",
        "TAXA",
        "ORGANISMS",
        "TITLE",
        "AB_BIO",
        "DATA_POINTS",
        "START_YEAR",
        "END_YEAR",
        "CENT_LAT",
        "CENT_LONG",
        "NUMBER_OF_SPECIES",
        "NUMBER_OF_SAMPLES",
        "NUMBER_LAT_LONG",
        "TOTAL",
        "GRAIN_SIZE_TEXT",
        "AREA_SQ_KM",
        "DATE_STUDY_ADDED",
        "ABUNDANCE_TYPE",
        "BIOMASS_TYPE",
        "SAMPLE_DESC_NAME"
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      "table": true,
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      "title": "BioTIME subset",
      "topics": [
        "BTsubset_data"
      ]
    },
    {
      "page": "BTsubset_meta",
      "title": "BioTIME subset metadata",
      "topics": [
        "BTsubset_meta"
      ]
    },
    {
      "page": "getAlphaMetrics",
      "title": "Alpha diversity metrics",
      "topics": [
        "getAlphaMetrics"
      ]
    },
    {
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      "title": "Beta diversity metrics",
      "topics": [
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      ]
    },
    {
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      "title": "Get Linear Regressions BioTIME",
      "topics": [
        "getLinearRegressions"
      ]
    },
    {
      "page": "gridding",
      "title": "gridding BioTIME data",
      "topics": [
        "gridding"
      ]
    },
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      "title": "Rarefy BioTIME data to an equal number of samples per year",
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      "topics": [
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        "scale_colour_biotime",
        "scale_fill_biotime"
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      "topics": [
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