Package: BioTIMEr 0.2.3
BioTIMEr: Tools to Use and Explore the 'BioTIME' Database
The 'BioTIME' database was first published in 2018 and inspired ideas, questions, project and research article. To make it even more accessible, an R package was created. The 'BioTIMEr' package provides tools designed to interact with the 'BioTIME' database. The functions provided include the 'BioTIME' recommended methods for preparing (gridding and rarefaction) time series data, a selection of standard biodiversity metrics (including species richness, numerical abundance and exponential Shannon) alongside examples on how to display change over time. It also includes a sample subset of both the query and meta data, the full versions of which are freely available on the 'BioTIME' website <https://biotime.st-andrews.ac.uk/home.php>.
Authors:
BioTIMEr_0.2.3.tar.gz
BioTIMEr_0.2.3.zip(r-4.5)BioTIMEr_0.2.3.zip(r-4.4)BioTIMEr_0.2.3.zip(r-4.3)
BioTIMEr_0.2.3.tgz(r-4.4-any)BioTIMEr_0.2.3.tgz(r-4.3-any)
BioTIMEr_0.2.3.tar.gz(r-4.5-noble)BioTIMEr_0.2.3.tar.gz(r-4.4-noble)
BioTIMEr_0.2.3.tgz(r-4.4-emscripten)BioTIMEr_0.2.3.tgz(r-4.3-emscripten)
BioTIMEr.pdf |BioTIMEr.html✨
BioTIMEr/json (API)
NEWS
# Install 'BioTIMEr' in R: |
install.packages('BioTIMEr', repos = c('https://biotimehub.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/biotimehub/biotimer/issues
- BTsubset_data - BioTIME subset
- BTsubset_meta - BioTIME subset metadata
Last updated 3 months agofrom:daa43a2df6. Checks:OK: 7. Indexed: yes.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Oct 10 2024 |
R-4.5-win | OK | Oct 10 2024 |
R-4.5-linux | OK | Oct 10 2024 |
R-4.4-win | OK | Oct 10 2024 |
R-4.4-mac | OK | Oct 10 2024 |
R-4.3-win | OK | Oct 10 2024 |
R-4.3-mac | OK | Oct 10 2024 |
Exports:getAlphaMetricsgetBetaMetricsgetLinearRegressionsgriddingresamplingscale_color_biotimescale_colour_biotimescale_fill_biotimethemeBioTIME
Dependencies:backportscheckmateclassclassIntcliclustercollapsecolorspacecpp11DBIdggridRdplyre1071fansifarvergenericsggplot2gluegtableisobandKernSmoothlabelinglatticelifecyclemagrittrMASSMatrixmgcvmunsellnlmepermutepillarpkgconfigproxypurrrR6RColorBrewerRcpprlangs2scalessfstringistringrtibbletidyrtidyselectunitsutf8vctrsveganviridisLitewithrwk
Readme and manuals
Help Manual
Help page | Topics |
---|---|
BioTIME subset | BTsubset_data |
BioTIME subset metadata | BTsubset_meta |
Alpha diversity metrics | getAlphaMetrics |
Beta diversity metrics | getBetaMetrics |
Get Linear Regressions BioTIME | getLinearRegressions |
gridding BioTIME data | gridding |
Rarefy BioTIME data to an equal number of samples per year | resampling |
Scale construction for ggplot use | scale_color_biotime scale_colour_biotime scale_fill_biotime |